After last month’s catastrophe, people protest on the water and call for change.

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Clarification: This story has been edited to clarify reporting on the treatment of fish with antibiotics and the presence of pollution near fish farms.

Last Saturday afternoon, I was aboard the F/V Galactic Ice, just off the south end of Bainbridge Island — only a few miles as the crow flies, plus a short, freezing swim, from Gov. Jay Inslee’s house. It was a balmy end-of-summer day with a hazy sun; every so often, the ferry from Seattle to Bremerton glided by, picturesque on the glinting water with a background of our noble fir trees. But this wasn’t a pleasure cruise. Something rotten is in the water, right there.

It’s visible from the ferry, but its purpose is obscure: a strange, low-slung, metal-and-mesh setup that seems to float on the water, an industrial blot on a lovely Pacific Northwest landscape. Closer up, you get a sense of the scale of the thing, massive enough that its two porta-potties are dwarfed, as are the uniformed guards patrolling the catwalk perimeter. Inside watery pens, enclosed by netting, fish flip themselves up out of the water, one after another, over and over. It’s a sight that usually occasions joy: Look, a fish jumped! Here, it’s contained and constant, guarded and enmeshed.

This is a net-pen fish farm. It looks like a jail, and it smells like death. It’s difficult to describe the stench that wafted in the breeze on the downwind side: fetid like fertilizer, acrid like ammonia, redolent of rot. The structure’s not far at all from Bainbridge’s shore; on a hot day, the smell at the pretty waterfront homes must be unbearable.

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This fish farm is raising nonnative Atlantic salmon, just like the one that catastrophically collapsed near the San Juan Islands last month, and it’s owned by the same multinational, multibillion-dollar corporation, Cooke Aquaculture. Inslee called that situation “an emergency” and directed the Department of Ecology to put any new permits for salmon-farm net pens on hold. Now people of the Pacific Northwest are calling, urgently, for him to put a stop to net-pen fish farming in our waters altogether.

Washington state holds the dishonor of producing the most farmed Atlantic salmon in the nation; Oregon has no such farms, while Alaska and California have banned them. Why do we let it continue here? Many Seattle chefs are aghast. Restaurateur Tom Douglas calls the practice “pillaging our waters.” Edouardo Jordan of Salare and JuneBaby terms it “shocking.” Renee Erickson, of The Walrus and the Carpenter, The Whale Wins, and more, says it’s “just gross.”

Unnaturally crowded together in their pens, farmed Atlantic salmon are sometimes administered antibiotics prescribed by veterinarians to treat diseases. Chef Hajime Sato of sustainable sushi restaurant Mashiko points out that, inevitably, drugs “get into the surrounding waters and affect native fish. Then when you eat those fish, you are putting those antibiotics into your body.”

Some farmed Atlantic salmon become diseased and develop deformities. “Have you seen them?” Erickson asks. “Never mind [that] they remove the head and guts so you cannot see what is sadly wrong with the fish before being sold.” She adds, “They taste bad.”

Douglas objects to net-pen farming, saying it brings sea lice, artificially lowers prices in the market, introduces invasive species into local waters and generates “intense clouds of waste.” The state Department of Ecology has established clean water standards for fish farms, but the sediment below this particular pen has not been sampled in the past 10 years.

Our local salmon is an intrinsic part of our region’s identity, going back eons. In case you missed it, a Lummi tribal master carver, Jewell Praying Wolf James, recently told my colleague Lynda Mapes that this kind of fish farming feels like history repeating itself. “There are fewer and fewer Puget Sound chinook and coho returning to the spawning habitat” because of environmental trouble, so “it is open and available, and becomes ripe for colonization, just like what happened to us,” James said. “And private corporations are making a large profit off it. It is like when the settlers came.”

Cooke Aquaculture initially blamed last month’s fish-farm collapse on the eclipse. A fact-check showed the tides were not unusual, and the company admitted that it already knew that the pens were in bad shape. Cooke’s initial estimate that 4,000 to 5,000 Atlantic salmon had escaped turned out to be orders of magnitude below the truth. According to the company as of September 6, “the current total count of fish recovered from the damaged farm site is 145,101” — out of a total of 305,000 Atlantic salmon being raised on the farm. (They also said they “are deeply sorry.”)

Sato has something to say to Gov. Inslee: “Do the right thing for the people and the planet, not the corporations who don’t care about the environment. That’s why you were elected. A few bucks today isn’t worth [expletive] when you’ve destroyed the planet to get it. Think about it.” Erickson would like to tell him this: “Please stop fish farming in our beautiful waters. We need to set an example of what sustainable is.”

Protesters on boats circle a Cooke Aquaculture fish farm just across Elliott Bay from downtown Seattle, with the southern tip of Bainbridge Island in the background. (Bethany Jean Clement / The Seattle Times)

Off Bainbridge last Saturday, a fish-farm security boat got on a loudspeaker, booming across the water. “ON THE GALACTIC ICE, ON THE GALACTIC ICE,” the voice said. “FOR YOUR OWN SAFETY, YOU MUST STAY 100 FEET FROM THE PENS.” Untrue, as a Coast Guard vessel confirmed — those waters are our public waters. There was no legal injunction except against touching Cooke Aquaculture property.

A ragtag protest flotilla was forming, planned by the nonprofit Our Sound, Our Salmon, with kayaks, canoes, stand-up paddleboards and one guy in a wet suit on a surfboard convening near shore. Eventually, a few dozen boats — recreational and commercial-fishing vessels, sailboats, a pretty little craft with a big Suquamish tribe flag — circled the fish farm’s pens. Homemade signs said the likes of “HEY JAY, WHATA YA SAY? BAN NET PENS,” “NUCK THE FET PENS” and “MAKE SALMON GREAT AGAIN.” Sometimes boater/protesters hollered “WHAT’S THAT SMELL?!” and held their noses, standing on their decks in the slow procession.

Then two people on a Jet Ski noticed a bird trapped under the fish farm’s walkway, on the supporting structure just above the waterline, behind a wall of netting. It was a great blue heron, running back and forth frantically on its skinny legs, trying to get out. The guards, the woman on the Jet Ski shouted, had told her there was nothing they could do.

Cooke Aquaculture wants to build yet another massive net-pen fish farm in the Strait of Juan de Fuca at Port Angeles. It’s unconscionable, from stem to stern. Think about it, Gov. Inslee.